fungi.watchGet the data

Sampling context

Where each pathogen came from

Records grouped by the kind of host or setting they were isolated from. Large unknown segments show where metadata is missing.

Bar scale
  • Human
  • Animal
  • Plant
  • Environment
  • Food
  • Other clinical
  • Laboratory
  • Unknown

Hover or focus a segment for exact counts

  • Candida auris34,410
  • Cryptococcus neoformans6,862
  • Fusarium spp.6,258
  • Aspergillus fumigatus5,320
  • Candida albicans4,832
  • Mucorales2,430
  • Nakaseomyces glabrata2,251
  • Candida parapsilosis1,963
  • Candida tropicalis1,581
  • Pichia kudriavzevii791
  • Histoplasma spp.595
  • Coccidioides spp.428
  • Cryptococcus gattii397
  • Talaromyces marneffei383
  • Paracoccidioides spp.112
  • Eumycetoma agents97
  • Scedosporium spp.38
  • Lomentospora prolificans20
  • Pneumocystis jirovecii12

Raw host and isolation values

The most frequent free-text values before they are grouped into categories.

Top hosts

  1. Homo sapiens32,123
  2. environment25
  3. Homo sapiens (male)6
  4. dog5
  5. Environment5
  6. Homo sapiens (female)2
  7. laboratory evolved2
  8. Dog2
  9. Dolphin1
  10. Canis lupus familiaris1

Top isolation sources

  1. urine4,505
  2. blood4,193
  3. axilla/groin1,580
  4. Axilla/Groin1,378
  5. Swab of axilla and groin1,370
  6. other1,049
  7. wound939
  8. Swab_Skin877
  9. skin568
  10. sputum564
  11. wastewater561
  12. Axilla and groin556
  13. SWAB_SKIN521
  14. Axilla and Groin519
  15. Axilla and groin swab445